io.github.helena-bioinformatics/noodle

Est-ce que io.github.helena-bioinformatics/noodle est sûr ?

Au dernier audit MCP Hub, le serveur MCP « io.github.helena-bioinformatics/noodle » est classé « Non encore testé ». Référencé dans l'annuaire. Seul le pentest comportemental fait foi, et il n'a pas encore été exécuté sur ce serveur. Le verdict est réévalué en continu ; consultez la fiche pour l'état à jour.

Méthode : MCP Hub analyse la description de chaque outil (couche 1) et, pour le verdict fort, exécute le serveur dans une micro-VM isolée avec leurres et réseau bloqué (couche 2). On publie des noms et des compteurs, jamais le contenu brut renvoyé par un outil.

Les 7 outils

• get_corpus_summary≈ 608 tokens

  Return public corpus coverage, source, freshness, and count metadata. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (0)

  Exemple d'appel

  {"name": "get_corpus_summary", "arguments": {}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"scope": "texte", "counts": "texte", "sources": [], "generated_at": "texte", "contract_version": "texte", "deduplication_keys": []}}

• get_publication_details≈ 1066 tokens

  Retrieve one complete public bibliographic record by PMID after search. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (1)

  Paramètres

  • pmid · string · requis
    One PubMed identifier to look up in Noodle's current public corpus, as 1 to 12 digits without a PMID prefix.

  Exemple d'appel

  {"name": "get_publication_details", "arguments": {"pmid": "texte"}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"publication": "texte", "usage_boundary": {}, "contract_version": "texte"}}

• get_publication_neighborhood≈ 1645 tokens

  Retrieve the bounded citation and semantic neighborhood around one PMID. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (2)

  Paramètres

  • pmid · string · requis
    One PubMed identifier, as 1 to 12 digits.
  • from_work_id · ? · optionnel
    Optional prior work ID for a reversible graph path.

  Exemple d'appel

  {"name": "get_publication_neighborhood", "arguments": {"pmid": "texte"}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"edges": [], "nodes": [], "freshness": "texte", "anchor_pmid": "texte", "stale_after": "texte", "generated_at": "texte", "graph_version": "texte", "anchor_node_id": "texte", "anchor_work_id": "texte", "policy_version": "texte", "usage_boundary": "texte", "release_channel": "texte"}}

• get_work_details≈ 1120 tokens

  Retrieve one complete public bibliographic record by Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (1)

  Paramètres

  • work_id · string · requis
    Canonical Noodle Literature Corpus work identifier.

  Exemple d'appel

  {"name": "get_work_details", "arguments": {"work_id": "texte"}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"publication": "texte", "usage_boundary": {}, "contract_version": "texte"}}

• get_work_neighborhood≈ 1657 tokens

  Retrieve the bounded citation and semantic neighborhood around one Noodle work identifier. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (2)

  Paramètres

  • work_id · string · requis
    Canonical work identifier to place at the graph center.
  • from_work_id · ? · optionnel
    Optional prior work ID for a reversible graph path.

  Exemple d'appel

  {"name": "get_work_neighborhood", "arguments": {"work_id": "texte"}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"edges": [], "nodes": [], "freshness": "texte", "anchor_pmid": "texte", "stale_after": "texte", "generated_at": "texte", "graph_version": "texte", "anchor_node_id": "texte", "anchor_work_id": "texte", "policy_version": "texte", "usage_boundary": "texte", "release_channel": "texte"}}

• search_biomedical_literature≈ 1486 tokens

  Semantically search Noodle's public PubMed-derived biomedical corpus. Include known PMID, DOI, or PMCID identifiers in the query so they can act as exact anchors. Results are for literature discovery and professional review, not diagnosis or treatment.

  Paramètres, retour & exemple (4)

  Paramètres

  • sort · string · optionnel · relevance | newest | oldest
    Result ordering: relevance-ranked, newest publication first, or oldest publication first.
  • limit · integer · optionnel
    Maximum number of publications to return, from 1 to 25.
  • query · string · requis
    Natural-language literature question or exact PMID, DOI, PMCID, gene, variant, phenotype, HPO, or OMIM query. Include every known publication identifier when comparing or finding related papers.
  • cursor · ? · optionnel
    Opaque continuation cursor from the preceding response for the same query and sort order; omit for the first page.

  Exemple d'appel

  {"name": "search_biomedical_literature", "arguments": {"query": "texte"}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}], "structuredContent": {"query": "texte", "results": [], "has_more": true, "graph_used": true, "next_cursor": "texte", "graph_version": "texte", "returned_count": 1, "usage_boundary": {}, "contract_version": "texte", "searchable_fields": [], "semantic_index_used": true, "graph_degraded_reason": "texte"}}

• support_helena≈ 142 tokens

  Learn about the separate Helena Good MCP. This opt-in information action initiates no payment or outreach and changes no scientific result.

  Paramètres, retour & exemple (0)

  Exemple d'appel

  {"name": "support_helena", "arguments": {}}

  Exemple de retour

  {"content": [{"type": "text", "text": "…"}]}

C'est votre serveur ?

Revendiquez-le sur l'espace créateur (preuve GitHub, domaine ou npm) pour afficher le badge « propriétaire vérifié » et lancer un pentest comportemental à la demande afin d'obtenir le badge « Vérifié ».

Créer un compte / revendiquer →

Source

https://api.helena.bio/noodle/v1/mcp